LECTURES
Class Notes
Pranav’s ongoing class notes can be found here. Formalized typed up course material can be found at the links below.
| Chapter | CH1 | CH2 | CH3 | CH4 | CH5 |
|---|---|---|---|---|---|
| PDF Link |
Videos
If the video isn’t linked yet, check Brown Panopto or the Media Library in Canvas.
| Date | Topic | Video | Extra Material |
|---|---|---|---|
| 1/23/24 | Welcome to CS 284! | video | |
| 1/28/25 | Introduction to Haplotype Phasing | video | |
| 1/30/25 | Clark and EM Algorithms | video | |
| 2/4/25 | Likelihood Functions for Haplotype Phasing | video | |
| 2/6/25 | NP Completeness of Parsimony Phasing | video | Haplotype Phasing NP-Completeness |
| 2/11/25 | Overview of GWAS Computational Pipeline | video | |
| 2/13/25 | Introduction to Linkage Disequilibrium | video | |
| 2/20/25 | Wrapping up LD and Introduction to Protein Folding | video | |
| 2/25/25 | Generating Structures from Embeddings for Medical Applications | video | Deep Learning in Protein Structure Prediction |
| 2/27/25 | AlphaFold's Data and Internal Protein Representations | video | Deep Learning in Protein Structure Prediction |
| 3/4/25 | Introduction to Markov Chains | video | |
| 3/6/25 | Random Walks and Metropolis-Hastings | video | MCMC Slides |
| 3/11/25 | Stationary Distribution of Metropolis-Hastings and the Hard-Core Model | video | |
| 3/13/25 | Estimating Ensemble Averages in the Hard-Core Model | video | |
| 3/18/25 | Introduction to Population Substructure | video | |
| 3/20/25 | Estimating Standalone and Admixed Population Origins with Stochastic Processes | video | |
| 4/1/25 | LD Theory | video | |
| 4/3/25 | SNP Tagging Algorithms | video | |
| 4/8/25 | SNP Tagging Algorithms Continued | video | |
| 4/10/25 | Wrapping Up SNP Tagging/Selection Algorithms | video | |
| 4/15/25 | Urn Models, Ewens Sampling Lemma, and Returning to GWAS | video | |
| 4/17/25 | Missing Heritability and Introduction to Causality | video | |
| 4/22/25 | Causality and the Regulatory Genome | video | |
| 4/24/25 | Single SNP Tests of Association | video |