| 01/19 - 01/26 |
Variation and the human genome |
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Denotes seminal work
Denotes review article
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| 01/26 - 02/02 |
Linkage disequilibrium (LD) |
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- Linkage Disequilibrium (Past Presentation) [ppt] [pdf]
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| 02/04 - 02/09 |
TagSNP Selection |
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Typed up relevant class notes [PDF]
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4 Feb 2021 Lecture Whiteboard Notes [PDF]
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9 Feb 2021 Lecture Whiteboard Notes [PDF]
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Old Notes:
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Informativeness SNP tagging [ppt] [pdf]
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- Selecting a Maximally Informative Set of Single-Nucleotide Polymorphisms
for Association Analyses Using Linkage Disequilibrium [PDF]
- Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies [PDF]
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Spectral Graph Theory and Spectral Clustering |
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New chapter, no notes yet
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Coalescent Theory |
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Old Notes:
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Urn Models, Wright Fisher, Ewens Sampling Lemma [pdf]
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URN MODELS in GENETICS: Wright-Fisher
Models and the Ewens Sampling Lemma [pdf]
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Minichiello-durbin algorithm [pdf]
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Mapping trait loci by use of inferred ancestral recombination graphs [HTML]
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Genome-wide Association Studies (GWAS) |
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Old Notes:
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Mapping trait loci by use of inferred ancestral recombination graphs [HTML]
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Minichiello-durbin algorithm [pdf]
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Haplotype Reconstruction |
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MCMC and the Population Genomics Substructure Problem |
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Old Notes:
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Markov chains intro [pdf]
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A tutorial on hidden Markov models [pdf]
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Genomic Privacy Algorithms |
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Causality and Prediction |
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