LECTURES
Class Notes
| Chapter | CH1 | CH2 | CH3 | CH4 | CH5 |
|---|---|---|---|---|---|
| PDF Link | notes | notes | notes | notes | notes |
| Melinda Link | notes | - | - | - | - |
Note Sign-up
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Videos
If the video isn’t linked yet, check Brown Panopto or the Media Library in Canvas.
| Date | Topic | Video | Extra Material |
|---|---|---|---|
| 1/25/24 | Welcome to CS 182! | recording | slides |
| 1/30/24 | Random Walks and Karlin-Altschul Statistics | recording | |
| 2/1/24 | Karlin-Altschul Statistics Continued and BLAST Algorithm Seeding | recording | |
| 2/6/24 | BLAST Algorithm and Random Walk Difference Equations | recording | |
| 2/8/24 | Gumbel Distribution for Maximal Excursion and 1D Karlin-Altschul Statistics | recording | |
| 2/13/24 | Intro to Genome Assembly | recording | |
| 2/15/24 | Poisson Processes | recording | |
| 2/22/24 | de Bruijn Graphs and the Idury-Waterman Algorithm | recording | |
| 2/27/24 | Idury-Waterman Algorithm and de Bruijn Graph Statistics | recording | slides |
| 2/29/24 | Waterman Statistics | recording | |
| 3/5/24 | Waterman Statistics Questions 1 and 2 | recording | |
| 3/7/24 | Waterman Statistics Question 3 and Linearity of Expectation | recording | |
| 3/12/24 | Midterm | ||
| 3/14/24 | The Ham Smith Problem | recording | |
| 3/19/24 | Intro to Ancestral Recombination Graphs | recording | |
| 3/21/24 | Setup for the Minichiello-Durbin Algorithm | recording | |
| 4/2/24 | Minichiello-Durbin Algorithm and Marginal ARGs | recording | slides |
| 4/4/24 | ARG Wrap-up and HMM Learning | recording | |
| 4/9/24 | No Lecture! | ||
| 4/11/24 | No Lecture! | ||
| 4/16/24 | Linear Algebra Review for Spectral Clustering | recording | |
| 4/18/24 | Matrix Decompositions and Spectral Analysis | recording | |
| 4/23/24 | Algorithm for Spectral Clustering | recording | |
| 4/25/24 | Normalized Laplacian and Spectral Clustering Theory | recording | |
| 4/30/24 | Spectral Clustering Wrap-up and Intro to Protein Folding | recording | |
| 5/2/24 | Protein Folding and Course Wrap-up | recording |