A C D F G I M P R S T V Z

G

getContents() - Method in class cs195z.support.CElement

Gets vector of numbers.

getCost(ZCharacter) - Method in class cs195z.support.PSpeciesNode

Gives the stored cost for this character in the cost array.

getFelsensteinMatrix() - Method in class cs195z.support.PDataSet

getLikelihood(ZCharacter) - Method in class cs195z.support.PSpeciesNode

Retrieves a likelihood probability for a character.

getName() - Method in class cs195z.support.CElement

Gets the serializable object that "names" the element.

getName() - Method in class cs195z.support.PSpeciesNode

getResult() - Method in class cs195z.cluster.CStudentCAST

The standard issue method is probably ok, assuming you assign an Iterable>> to _result.

getResult() - Method in class cs195z.cluster.CStudentKMeans

The standard issue method is probably ok, assuming you assign an Iterable>> to _result.

getResult() - Method in interface cs195z.support.CAlgorithm

Returns an iterable set of clusters, each of which is an iterable collection of elements.

getResult() - Method in class cs195z.support.CDataParser.CStandardDataParser

getResult() - Method in interface cs195z.support.CDataParser

getSankoffMatrix() - Method in class cs195z.support.PDataSet

getSequence() - Method in class cs195z.support.PSpeciesNode

Gives the ordered sequence of characters at this position

getSequenceLength() - Method in class cs195z.support.PDataSet

getStateIndices() - Method in class cs195z.support.PDataSet

getTree() - Method in class cs195z.support.PDataSet

getTreeLevel() - Method in class cs195z.support.PSpeciesNode

Gives the depth of this node in the tree.