A C D F G I M P R S T V Z

C

CAbstractAlgorithm<T extends Number,E extends Serializable> - Class in cs195z.support

CAbstractAlgorithm() - Constructor for class cs195z.support.CAbstractAlgorithm

CAlgorithm<T extends Number,E extends Serializable> - Interface in cs195z.support

CDataParser<T extends Number,E extends Serializable> - Interface in cs195z.support

An interface for parsing our data.

CDataParser.CStandardDataParser - Class in cs195z.support

Implementation class of CDataParser for Doubles and Strings.

CDataParser.CStandardDataParser(File) - Constructor for class cs195z.support.CDataParser.CStandardDataParser

CDataParser.MalformedException - Exception in cs195z.support

Our specific exception class for bad data.

CDataParser.MalformedException(String) - Constructor for exception cs195z.support.CDataParser.MalformedException

CElement<T extends Number,E extends Serializable> - Class in cs195z.support

The atomic unit you want to cluster.

CElement(List<T>) - Constructor for class cs195z.support.CElement

CElement(List<T>, E) - Constructor for class cs195z.support.CElement

clearCost() - Method in class cs195z.support.PSpeciesNode

Initializes the cost value array.

clearLikelihood() - Method in class cs195z.support.PSpeciesNode

Clears the likelihood probability array.

clickStepped() - Method in class cs195z.support.CAbstractAlgorithm

clickStepped() - Method in interface cs195z.support.CAlgorithm

complete() - Method in class cs195z.support.CAbstractAlgorithm

complete() - Method in interface cs195z.support.CAlgorithm

convertTree(LinkedBinaryTree<PSpeciesNode>) - Static method in class cs195z.support.PTreeVisualizer

Converts an nds4 LinkedBinaryTree into an org.forester.phylogeny.Phylogeny

cs195z.cluster - package cs195z.cluster

cs195z.phylogeny - package cs195z.phylogeny

cs195z.support - package cs195z.support

CStudentCAST<T extends Number,E extends Serializable> - Class in cs195z.cluster

Comments

CStudentCAST(List<CElement<T, E>>, double, WeightedGraph<CElement<T, E>, DefaultWeightedEdge>) - Constructor for class cs195z.cluster.CStudentCAST

Please do not modify this constructor.

CStudentKMeans<T extends Number,E extends Serializable> - Class in cs195z.cluster

Comments

CStudentKMeans(List<CElement<T, E>>, int) - Constructor for class cs195z.cluster.CStudentKMeans

Please do not modify this constructor.

CUtils - Class in cs195z.support

CUtils() - Constructor for class cs195z.support.CUtils

Constructs the GUI for running CAlgorithms.

CUtils.Algorithms - Enum in cs195z.support