| Thurs, 1/21 |
Welcome to CSCI 1850: Deep Learning in Genomics |
Slides |
| Tues, 1/26 |
The Central Dogma, TF Binding Prediction |
Slides |
| Thurs, 1/28 |
TF Binding Prediciton Using Deep Learning Methods |
Slides |
| Tues, 2/2 |
DeepBind, Evaluation Metrics |
Slides |
| Thurs, 2/4 |
Evaluation Metrics cont., Chromatin Accesibility Prediction |
Slides |
| Tues, 2/9 |
DeepSEA, DanQ |
Slides |
| Thurs, 2/11 |
Basenji, Section I Summary |
Slides |
| Thurs, 2/18 |
Gene expression: task, biology, previous work |
Slides |
| Tues, 2/23 |
3D conformation capture through HiC, HiCPlus |
Slides |
| Thurs, 2/25 |
HiCNN, GANs, HiCGAN |
Slides |
| Tues, 3/2 |
HiCGAN cont., Imputation of genomic signals |
Slides |