VariationHunter/CommonLAW (integrated in Tardis)

A tool for discovery of structural variation in one or more individuals simultaneously using high throughput technologies.

NovelSeq

The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data.

MirrorTree

An efficient deterministic algorithm which directly maximizes the similarity between two labeled gene trees and finds interaction partners among protein/domain families.

Motif Counting

Uses Alon et al's color coding technique for counting non-induced occurrences of subgraph topologies in the form of trees.

rec-BTP

Binary Tree Partition (BTP) is a novel combinatorial formulation of the problem of constructing the subpopulations of tumor cells from the variant allele frequencies of somatic mutations.

LAPSI (forthcoming)

A novel method for detecting and genotyping somatic structural variations (SVs) in multiple whole-genome sequencing tumor samples