Publications

  • Ashley Stuckey, Andrew Fischer, Daniel H Miller, Sara Hillenmeyer, Kyu K Kim, Anna Ritz, Rakesh K Singh, Benjamin J Raphael, Laurent Brard and Alexander S Brodsky. Integrated Genomics of Ovarian Xenograft Tumor Progression and Chemotherapy Response. BMC Cancer 2011. 11:308. [publisher link]
  • Anna Ritz, Pamela L. Paris, Michael M. Ittmann, Colin Collins, and Benjamin J. Raphael. Detection of Recurrent Rearrangement Breakpoints from Copy Number Data. BMC Bioinformatics 2011. 12:114. publisher link]
  • Trevor O'Brien, Anna Ritz, Benjamin J. Raphael, and David H. Laidlaw. Gremlin: An Interactive Visualization Model for Analyzing Genomic Rearrangements. IEEE Trans. on Visualization and Computer Graphics (Proc. IEEE Information Visualization Conference 2010). 16(6):918-26. [publisher link]
  • Anna Ritz, Ali Bashir, and Benjamin J. Raphael. Structural Variation Analysis with Strobe Reads. Bioinformatics 2010. 26(10): 1291-1298. [publisher link]
  • Deborah S Gross, Robert Atlas, Jeffrey Rzeszotarski, Emma Turetsky, Janara Christensen, Sami Benzaid, Jamie Olson, Thomas Smith, Leah Steinberg, Jon Sulman, Anna Ritz, Benjamin Anderson, Catherine Nelson, David R Musicant, Lei Chen, David C Snyder, James J Schauer. ENCHILADA: Environmental Chemistry through Intelligent Atmospheric Data Analysis. Environmental Modelling & Software 2010. 25(6):760-769. [publisher link]
  • Vinh Nguyen, Lulu Cao, Jonathan T. Lin, Norris Hung, Anna Ritz, Kebing Yu, Radu Jianu, Samuel P. Ulin, Benjamin J. Raphael, David H. Laidlaw, Laurent Brossay, and Arthur R. Salomon. A New Approach for Quantitative Phosphoproteomic Dissection of Signaling Pathways Applied to T Cell Receptor Activation. Molecular and Cellular Proteomics 2009. 8: 2418-2431. [publisher link]
  • Anna Ritz, Gregory Shakhnarovich, Arthur R. Salomon, and Benjamin J. Raphael. Discovery of Phosphorylation Motif Mixtures in Phosphoproteomics Data. Bioinformatics 2009. 25(1):14-21. [publisher link]
  • Lulu Cao, Kebing Yu, Cindy Banh, Vinh Nguyen, Anna Ritz, Benjamin J. Raphael, Yuko Kawakami, Toshiaki Kawakami, and Arthur R. Salomon, Quantitative Time-Resolved Phosphoproteomic Analysis of Mast Cell Signaling. Journal of Immunology 2007. 179: 5864-5876. [publisher link]
  • Benjamin J. Anderson, Deborah S. Gross, David R. Musicant, Anna M. Ritz, Thomas G. Smith, Leah E. Steinberg, Adapting K-Medians to Generate Normalized Cluster Centers, Proceedings of the Sixth SIAM International Conference on Data Mining, Joydeep Ghosh, Diane Lambert, David Skillcorn, Jaideep Srivastava, editors, Society for Industrial and Applied Mathematics, Bethesda, MD, 2006, pages 165-175. [pdf]
  • Benjamin J. Anderson, David R. Musicant, Anna M. Ritz, Andrew Ault, Deborah S. Gross, Melanie Yuen, Markus Gaelli, User-Friendly Clustering for Atmospheric Data Analysis, Carleton College Computer Science Technical Report 2005a.[pdf]